PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 664aa    MW: 72390.2 Da    PI: 6.6104
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07270290526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_011075220.1 270 PCPDFRK-GACRRGDMCEYAHG 290
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.04E-1317141IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1218130IPR020683Ankyrin repeat-containing domain
PfamPF000232.4E-461117IPR002110Ankyrin repeat
CDDcd002041.50E-961126No hitNo description
PROSITE profilePS5029710.20691155IPR020683Ankyrin repeat-containing domain
SMARTSM003564.0E-6265291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4269292IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5270290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582270292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4298328IPR000571Zinc finger, CCCH-type
SMARTSM0035637300323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MNVSLLNVET EDAFWGLLEF AANNDLEGFK KYVDHEPSSV DEVGLWYGRQ KGSNKMIVQQ  60
MTPLMVAATY GSTDVLKLIV SLPEVDVNRS AASGGSVNAI DIVQLLLAAG ADPNLVDANG  120
RRPLDVLFVS PKLQGMKYSL QVLLATDTSF EEEHNLRISI APSNSNSPPL SPSHLNGLPC  180
SPELVPSPKG GKSNDVPASS VPEKKEYPID PSLPDIKNSI YSTDEFRMFS FKVRPCSRAY  240
SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKGACR RGDMCEYAHG VFECWLHPAQ  300
YRTRLCKDGT SCNRRVCFFA HTTEELRPLY VSTGSAVPSP RSSNSAANAM DFAAAMSLLP  360
GSPSSVPLMS PSPFTPPMSP STNGISNTGW PSQPNVPALH LPGSNFQSSR LRSSLNARDI  420
PHEDLSLFAD IDVQQQQILA ELSLMSQPSI NTNLLNRSVR SKTLTPSNLD DIFSAESSSP  480
RYSEQALASA VFSPTHKSAI LNQFQQQQQT MLSPIKTSFS PRNGDHPIMQ APYGVPTSGR  540
MSPRTVEPIS PMSARISMLA RQEKQHHQFR SLSSRDLGSN AAAAVASLEE NWSKWGSPNG  600
PAEWAVGADD FGKLKRSSSF ELLNNGEEPD LSWVQSLVKE SAQDAKDNSA PHVAGAVNTG  660
PSSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075220.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLV4SCL20.0V4SCL2_9R
STRINGPOPTR_0016s05410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain